Assemblathon 2 ‘bird’ Stats

Posted on Posted in Uncategorized

Here are the basic assembly stats for the bird data:  contig cutoff size=250bp

 


N:250 n:N50 N80 N50 N20 max sum name
Average 105054.3 8628.2 1235754.8 3899483.5 9540090.4 19342630.9 1.03E+09

849 57 2283 8580 20266 51162 1933317 bird_8C_contigs.fa

826 47 2930 11620 23347 57581 2026432 bird_8C_scaffolds.fa

70467 7137 15629 39414 87076 554547 1.04E+009 bird_6C_contigs.fa

16495 32 3207491 10011138 19098421 49826764 1.04E+009 bird_6C_scaffolds.fa

37670 4312 25386 67833 146481 671540 1.06E+009 bird_7C_contigs.fa

8062 23 2481996 10935449 37556899 50983430 1.06E+009 bird_7C_scaffolds.fa

190778 16265 6158 18177 38632 235482 1.07E+009 bird_10C_contigs.fa

92853 81 228034 2965671 8717439 32814605 1.07E+009 bird_10C_scaffolds.fa

54037 4855 18956 56996 141343 712654 1.10E+009 bird_11C_contigs.fa

4341 18 1833827 16806221 42927674 64643934 1.10E+009 bird_11C_scaffolds.fa

65217 5939 21833 53463 107654 666240 1.11E+009 bird_13E_contigs.fa

10697 23 6275406 14199076 31408994 65236555 1.11E+009 bird_13E_scaffolds.fa

66411 6094 20919 52129 105709 500974 1.11E+009 bird_14E_contigs.fa

10685 23 6278647 14202455 31417212 65264275 1.11E+009 bird_14E_scaffolds.fa

92575 7505 13282 39267 88316 666240 1.11E+009 bird_12C_contigs.fa

10703 23 6286291 14221761 31447220 65359764 1.11E+009 bird_12C_scaffolds.fa

75487 8235 16695 41221 80970 465622 1.17E+009 bird_4C_contigs.fa

34104 638 157708 516390 1104665 2942284 1.17E+009 bird_4C_scaffolds.fa

88197 2156 32923 134986 342996 1818605 1.17E+009 bird_3E_contigs.fa

41941 22 4805477 14768158 35825618 67706724 1.17E+009 bird_3E_scaffolds.fa

84487 1383 40265 193162 559349 2740960 1.17E+009 bird_2C_contigs.fa

41941 22 4815185 14777158 35841802 67755865 1.17E+009 bird_2C_scaffolds.fa

77515 3165 31975 102941 220703 849043 1.19E+009 bird_9C_contigs.fa

54666 177 405855 1746932 4194166 11487706 1.19E+009 bird_9C_scaffolds.fa

346930 5356 4039 50966 170544 1468602 1.31E+009 bird_1C_contigs.fa

293817 270 17136 894118 4140394 19295806 1.31E+009 bird_1C_scaffolds.fa

175676 21521 10126 23871 50265 424718 1.84E+009 bird_5C_contigs.fa

130759 7527 13236 38683 323074 4670483 1.84E+009 bird_5C_scaffolds.fa

486721 77970 1478 3334 7742 203381 9.98E+006 bird_15C_contigs.fa

486721 77970 1478 3334 7742 203381 9.98E+006 bird_15C_scaffolds.fa